Cancer Genomics
L.Chin, A. Futreal, P. Lichter
EMBL Advanced Training Centre, Heidelberg, Germany
Saturday 17 September - Monday 19 September 2011
Final Programme
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Day One: Saturday 17 September 2011 |
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11:15 - 13:15 |
Arrival & Registration |
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13:15 - 13:30 |
Welcome and Opening Remarks |
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13:30 - 18:00 |
Session 1: Somatic Genetics I |
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13:30 - 14:00 |
Elias Campo: Somatic Genomic Alterations in Chronic Lymphocytic Leukemia |
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14:00 - 14:30 |
Jessica Zucman-Rossi: Genomics of Benign and Malignant liver tumors |
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14:30 - 14:45 |
Netta Mendelson Cohen: Evolutionary modeling for characterizing hitchhiker and functional DNA methylation patterns in normal and cancer epigenomes |
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14:45 - 15:00 |
Tatiana Popova: Patterns of genomic alteration in breast cancer evidence frequent whole genome duplication during cancer progression |
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15:00 - 15:30 |
Coffee Break |
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15:30 - 16:00 |
David Huntsman: Undiscovered country: the sequencing of rare and unusual tumors |
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16:00 - 16:30 |
James R. Downing: Molecular Pathology of Acute Leukemia |
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16:30 - 17:00 |
Gad Getz: Cancer Genome Analysis: Lessons learned |
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17:00 - 17:30 |
Coffee Break |
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17:30 - 17:45 |
John Brognard: Functional Analysis of Predicted Driver Mutations in Cancer-Associated Kinases |
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17:45 - 18:00 |
Alexander Pintzas: Analysis of oncogenic signatures reveal differential regulation of cellular pathways related to micro satellite instability (BRAFV600E) or epithelial-mesenchymal transition (RASG12V) |
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18:00 - 19:00 |
Keynote Speech Lynda Chin: Translating the cancer genomes |
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19:00 |
Dinner, followed by drinks in the ATC Roof Top Lounge until 23:00 |
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Day Two: Sunday 18 September 2011 |
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09:00 - 12:30 |
Session 2: Somatic Genetics II / Epigenetics |
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09:00 - 09:30 |
Manel Esteller: Human Cancer Epigenomes |
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09:30 - 10:00 |
Peter W. Laird: Mining the Cancer Methylome |
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10:00 - 10:15 |
Christina Grimm: Methylome analysis in human colorectal cancer and the Apc(Min/+) mouse model |
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10:15 - 10:30 |
Nick Wong: DNA methylation profiling of childhood acute lymphoblastic leukaemia using DNA methylation enrichment and next generation sequencing |
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10:30 - 11:00 |
Coffee Break |
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11:00 - 11:30 |
Yijun Ruan: Chromatin interaction and transcription regulation in cancer cells |
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11:30 - 12:00 |
Henk Stunnenberg: Epigenome Profiling in Hematopoiesis and Acute Myeloid Leukemia |
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12:00 - 12:15 |
Hans-Guido Wendel: A cooperative microRNA-tumor suppressor gene network in acute T-cell lymphoblastic leukemia (T-ALL) |
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12:15 - 12:30 |
Marcel Kool: Integrated genomics on molecular subtypes in medulloblastoma |
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12:30 - 14:30 |
Poster Session I and Lunch |
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14:30 - 18:30 |
Session 3: Mouse Genetics |
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14:30 - 15:00 |
David Adams: Large-scale screens for cancer genes in the mouse |
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15:00 - 15:30 |
Allan Balmain: Systems Genetics approaches to analysis of cancer susceptibility and progression |
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15:30 - 15:45 |
Alexandra Farrall: Identification of novel (epi)genetic modifier loci of Apcmin-induced tumourigenesis using chromosome substitution strains |
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15:45 - 16:00 |
Zdenek Kleibl: Next-gen sequencing analysis as a tool for identification of the breast cancer susceptibility genes |
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16:00 - 16:30 |
Coffee Break |
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16:30 - 17:00 |
Jos Jonkers: Comparative oncogenomics in mouse and human breast cancers |
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17:00 - 17:30 |
David Tuveson: Mouse Ductal Pancreatic Cancer Provides New Biological and Therapeutic Insights |
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17:30 - 18:00 |
Alan Clarke: Modelling Human Colorectal Cancer In The Mouse: Modifying Wnt driven neoplasia. |
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18:00 - 18:15 |
Heidi Dvinge: The transcriptional landscape of microRNAs in primary breast tumours |
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18:15 - 18:30 |
Jan Korbel: Dissecting extent and mechanisms of genomic structural rearrangement in somatic cells: lessons learned from the initial sequencing of childhood medulloblastoma genomes |
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18:30 - 23:00 |
Dinner and Party |
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Day Three: Monday 19 September 2011 |
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09:00 - 13:00 |
Session 4: Computational |
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09:00 - 09:30 |
Ewan Birney: Next Generation sequencing data in Cancer Genomics |
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09:30 - 10:00 |
Andy Futreal: Towards defining the somatic genetic architecture of cancer |
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10:00 - 10:15 |
Nuria Lopez-Bigas: Large-scale functional analysis and visualization of mutations from cancer genome projects. |
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10:15 - 10:30 |
Lu Chen: Increased levels of noisy splicing in cancers, but not for oncogene-derived transcripts |
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10:30 - 11:00 |
Coffee Break |
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11:00 - 11:30 |
Chris Sander: Network Models of Cancer Processes |
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11:30 - 12:00 |
Ilya Shmulevich: Molecular Networks in Cancer |
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12:00 - 12:30 |
Christopher Greenman: What does a cancer genome tell us about its past? |
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12:30 - 12:45 |
Giovanni Ciriello: Identifying Mutually Exclusive Driver Networks in Cancer |
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12:45 - 13:00 |
Yinyin Yuan: Quantitative image analysis of cellular heterogeneity in primary breast tumours enriches genomic assays |
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13:00 - 15:00 |
Poster Session II and Lunch |
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15:00 - 16:30 |
Session 5: Somatic Genetics III |
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15:00 - 15:30 |
Peter Lichter: Oncogenomics of pediatric brain tumors: Linking genes, genomic instability and molecular subgroups |
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15:30 - 16:00 |
Tatsuhiro Shibata: Integrated genome and transcriptome sequencing analyses of virus-associated hepatocellular carcinoma |
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16:00 - 17:00 |
Keynote Speech Michael Stratton: Evolution of the Cancer Genome |
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17:00 - 17:15 |
Closing Remarks and Poster Prize |
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17:30 |
Busses leave to Heidelberg City and Frankfurt International Airport |